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Due to the template structure of PS nanospheres, the Ag nanoparticles exhibit a hexagonal order at a uniform radius of 50 nm.
As shown in Fig. 1B, the three/one-dimensional scores of our models are always positive and are similar to those obtained with the template structure of 1zgl.
Moreover, the three-dimensional model of allosteric site of human Sirt-1 region 181 243 was performed using the template structure of a hexokinase from Sulfolobus Tokodaii by comparative modelling (PDB code: 2E2N) [51].
The molecular structures of NEL domains from Yersinia pestis YopM (NCBI Reference Sequence: ZP_02316950.1) and Salmonella typhimurium SlrP (GenBank: AAD39928.1) were modeled using the described PCAIN methodology with the identified optimal template structure of Shigella type III effector IpaH (PDB ID: 3CKD).
Template structure of 2W4O was superimposed over the modeled structure to know the location of conserved binding site of LPKC.
The fact that MEDELLER's core models are consistently better than Modeller's, even though MEDELLER employs no structure optimization methods, suggests that Modeller's probability density function, which was created to model soluble proteins, may distort the template structure of a MP.
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The goal of this experimental study was to evaluate the effect of the template structure on the comprehensibility of SPL use cases.
The crystal structure of the PRI (PDB entry 2BNH) was used as the template structure for modeling of GmRLK18-1.
A number of water molecules were present in the template structure, most of which were surface water molecules of crystallization[ 20].
The idea of I-TASSER was inspired by the encouraging template structure refinement of the TASSER simulations.
The template structure consisted of BjPutA residues 978 989.
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