Sentence examples for template structure from from inspiring English sources

For further analysis, the best models having lowest rmsd with respect to the template structure from each set of 100 models were selected (model 8: lower plot for aSVRs; and model 74: upper plot for SVRs).

Homology-based protein structure prediction methods rely on an alignment of the target sequence with a template structure from which model coordinates are derived according to the alignment.

For a given target sequence, FINDSITE identifies ligand-bound template structures from a set of distantly homologous proteins recognized by the PROSPECTOR_3 threading approach and superposes them onto the target's structure using the TM-align structural alignment algorithm.

Table 5 shows that in terms of fold recognition sensitivity, FR-t5 is comparable to the best of these existing 9 threading methods in finding structural templates for proteins with a wide range of sequence similarities to their template structures (from the family level to fold level).

The significance of the threading was determined on the family basis: if over 75% of the members in a family give the threading scores above threshold, the alignment between the sequence and the template structures from the family was considered significant.

Model building of the CDR loops were performed by selecting template structures from the PDB database with the highest sequence identity using Model antibody Loops module and were refined using Loop Refinement module in order to minimize steric clashes and ensure correct bond lengths and angles.

The next steps can be achieved through the RPBS Mobyle server using a two pass blast (PDBblast service) to identify candidate template structures from the query sequence.

The template structure for each target was derived from the whole structure of the T. thermophilus NDH-1 (4HEas as provided by the Swiss-Model template library.

PRI [ 23, 39] was used as the template structure (2bnh) from among the top hits generated by the 3D jury server.

Thus, as this determination of secondary structures proceeds from the root of the tree to the outer branches, the newly determined secondary structure has less and less variation from the template structure it is derived from.

An appropriate lipid template structure is selected from a pre-defined list of templates for the specified lipid abbreviation.