Sentence examples for template structure by from inspiring English sources

The monomer model was superimposed onto the trimeric 1HA0 template structure by using the program superimpose (26 ) and then further energy minimized by using CNS.

The Cry1Ab15 resembles the template structure by sharing a common three-domain extending conformation structure responsible for pore-forming and specificity determination.

To understand the structural and molecular conformational differences between the members of the rice ALDH protein superfamily as well as their protein-protein interaction characteristics and ligand-protein interaction properties, the 21 deduced ALDH protein sequences were modeled using the top ten PDB closed template structures by I-Tasser [62].

The template structure chosen by SWISS-MODEL was that of a recently solved crystal structure of 2009 H1N1 HA (PDB ID: 3LZG).

The BLAST algorithm is used for template structure identification by performing searches against the Protein Data Bank [ 41].

The template structure selected by the server was a potential phosphoesterase, aq_1956 of Aquifex aeolicus vf5 (PDB ID: 2YVT, A chain) [ 78].

Ligand molecular superimposition on the template structure was performed by database alignment method.

Molecular superimposition of antagonists on the template structure was performed by database alignment method.

The ligand molecular superimposition on template structure was performed by atom/shape-based RMS fit, multifit, and RMSD fit methods.

Gaps of missing residues in the loops of the template structure were closed by the 'Loop Search' tool implemented in Sybyl 8.1 (Tripos Inc., St .Louis, Missouri, 63144, USA).

An anti-parallel beta sheet, not seen in the template structure is formed by one strand from the N-terminus and another strand N-terminal of helix 5.