Sentence examples for template proteins with from inspiring English sources

Then, we searched for in silico models predicting the 3D structure of the FZC18 CRD using threading algorithms that seek for template proteins with well-characterized crystal structures in PDB databases (Phyre www server).

PSI-BLAST identified the potential template proteins with their respective PDB-ID with maximum similarity and E value.

Secondary and tertiary structural predictions were performed with I-Tasser software that identifies template proteins with similar folds from the PDB library, and predicts a model through a series of protein-modeling algorithms [ 49].

To infer interactions based on homology, we first collected template proteins with known structures that are similar to a given query protein and have at least 80% sequence identity and more than 80% of the query sequence aligned using cBlast [ 18].

Let T denote a template protein with solved structure and S a target protein without solved structure.

In order to understand the level of unique identifiers of conservation, we aligned the three target capsid proteins with the template proteins using CLC drug discovery workbench (Fig. 2).

iMembrane is used here to annotate the template protein structure with regards to its membrane insertion.

These template proteins were chosen based on a significant sequence similarity of h20S with these proteins in addition to their satisfactory crystallographic resolution.

Then, with gelatin as functional monomer, a polymeric network molded around the immobilized template proteins is obtained.

To make a strict test, we only include template proteins released before May of 2006 for this test, and we also excluded the templates with sequence identity >20% to the query.

For six of the PINALOG predictions, the functional descriptions of these templates proteins match with or are similar to the PINALOG predictions.