Sentence examples for template of predicted from inspiring English sources
Transcripts L1 and L' are transcribed respectively from the lagging and leading strand template of predicted region 3811548-3811699.
Transcripts M and M' are transcribed respectively from the lagging and leading strand template of predicted region 3896371-3896457.
TMBpro uses templates derived from known transmembrane β-barrels and aligns the predicted secondary structure to one of the 18 predefined templates based on the number of predicted β-strands.
The structures used as templates to provide 3D models of predicted proteins from T. cruzi were obtained from the Protein Data Bank (PDB) (44,700 sequences from ftp://ftp.wwpdb.org/pub/pdb/derived_data/ of December, 2006).
Function assignment was carried out based on the conservation of features in the 3D-Jury sequence-template alignment, such as correspondence of predicted and observed secondary structure and conservation of functionally important residues (e.g. residues involved in catalytic activity, in binding to ligands, DNA or other proteins).
The RMSD between 102 atom pairs of predicted model and template is 0.605 Å (Fig. 3).
The functional characterization of the AtSDC enzyme provided a template to predict similar functions of homologous proteins based on their sequence homology without extensive biochemical verification [ 1, 7].
The number of templates we start from and the number of predicted PPIs are surprisingly different between the stringent homology-based approach and the conventional homology-based approach.
In establishing support for this hypothesis, the researchers were also able to demonstrate that a profile of expressed genes could serve as a template to predict the mechanism of action for a third cancer drug, etoposide (ETOP).
Figures 3– 6 show alignments of predicted NAD-/FAD-binding proteins and corresponding templates.
Although there is no crystal structure for human PABP1 RRM4, a solution NMR structure for RRM4 of human tPABP (PABPc3), which differs in only one of 71 amino acids, is derived (PDB code 2D9P) allowing its use as a template for predicting the structure of human PABP1 RRM4.
