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For unbound proteins, the structural alignment between query and template is implemented to map the ligands in bound proteins to the unbound proteins.
For example, referring to the NW direction, the following novel template is implemented on the ACE16k: A = 0 0 0 0 1 0 0 0 0 B = - 3 0 0 0 3 0 0 0 0 I = thres (NW) (7).
This structure template is implemented by a specialized and a generic template, both receiving as template input parameter the number of elements of the output">OutputFilter. Also, both templates define a metafunction, apply, that takes the audio/video vectors supported by each filters as input parameters.
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The implementation process of the CAG-model illustrates how a proposed template was implemented and evolved over time in diverging ways according to the patients' needs.
For that purpose several auxiliary artifact templates were implemented to validate and connect all the filters following a pipeline of streams that compose a filter graph artifact template.
The in silico RT and MS/MS spectra of 42 lipid classes (21 glycerolipids and 21 sphingolipids from LipidBlast templates) were implemented in MS-DIAL and MS-FINDER.
Template generation is implemented using a MySQL database to store semantic relationships between standard experiment types from the MGED Ontology (Whetzel et al., 2006) and the sample annotation and experimental variables expected for each experiment type.
The template mechanism itself is implemented as a special page that can be pasted into any other page by calling its page title.
Specially, a template-based method is implemented for leaf modeling.
The structural alignment between query and templates in bSiteFinder is implemented by using Combinatorial Extension (CE) algorithm, which is provided by Biojava [28].
A layered architecture, called GenVoca is used and the configuration knowledge is implemented using C++ template metaprogramming as generator.
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