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This being the case, all three of our predictors which implemented this portion of the pipeline incorporated the multi-template combination algorithm (Cheng, 2008) (Table 1).
One would expect that the combinations algorithm would take much more than the complete algorithm.
Each primer-template combination was run with three technical replicates and three biological replicates.
The template matching algorithm iterates through the templates from largest to smallest searching for matches.
Fig. 5 Schematic overview of the reaction template extraction algorithm.
The proposed algorithms have a top level structure given by the template in Algorithm 2.
Units were sorted using Offline Sorter software from Plexon Inc (Dallas, TX) using a template matching algorithm.
This file was then used in a Template Filtering algorithm with seven nucleosome templates [developed in Weiner et al. (2010)] to call nucleosome positions genome wide.
Using fuzzy adaptive resonance theory mapping (ARTMAP) as the classifier template, genetic algorithms (GAs) were employed to perform exhaustive search for the best combination of parameter settings for individual classifier performance.
TFR Unigenes were clustered via the Pavlidis Template Matching (PTM) algorithm [ 24].
Units were sorted using Offline Sorter software from Plexon Inc., using a template-matching algorithm.
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