Exact(2)
Finally, while there are many concerns about whether barcoding should inform taxonomy [87] [91], barcodes can be only integrated into taxonomy by using its lingua franca: diagnostic characters.
The phylogenetic characterization of the shotgun sequences was achieved at different levels of taxonomy by using MetaPhlAn with default parameters [ 46].
Similar(58)
We amend previous chrysochlorid taxonomies by using Huetia as the appropriate genus-level designation for H. leucorhinus.
The effective bacterial sequences in the four samples were all assigned to corresponding taxonomies by using BLAST combined with MEGAN.
The revised taxonomy was developed by using many of the same processes and approaches that Bloom had used a half century earlier.
Additional discrimination on species-level taxonomy was proved by using supplementary markers: plastid psbA- trnH intergenic spacer and internal transcribed spacer 2 (ITS2) from nuclear ribosomal DNA (Kress et al. 2009; Chen et al. 2010).
Finally, a consensus-based taxonomy was developed by using the results of all three Delphi studies (the previous Delphi study and the international Delphi studies presented in this article).
The problem brought about by taxonomy can be corrected by using bifurcating phylogenetic trees that contain detailed evolutionary relationships for every taxon.
From this database, peptide sequences of prokaryotes and eukaryotes were extracted by using taxonomy information obtained from the NCBI Taxonomy FTP site [ 55].
HITdb OTU representative sequences were assigned taxonomy from the taxonomy of known species and Greengenes by using RDP classifier.
The utility of each one of the three proposals was demonstrated by using each taxonomy to perform actual classification.
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