Sentence examples for taxa calculated from inspiring English sources

The figure shows the numbers of taxa calculated from samples of sequence data used for constructing the HITdb.

D n and D s are the non-synonymous and synonymous pairwise sequence divergences between related taxa, calculated using the maximum likelihood method implemented in codeml in PAML 4 [ 71].

We visualized similarities in the amino acid composition of the focal taxa in a non-metric multidimensional scaling as implemented in PAST version 2.17c [ 86] based on compositional distances (one half the sum of squared difference in counts of residues) between taxa calculated with MEGA version 5.1 [ 77].

In the Bayesian inference tree based on the mitochondrial amino acid data set edited with ALISCORE [ 53, 54] comprising 2,729 positions of 49 taxa calculated with the CAT model implemented in PhyloBayes, the long-branch group is broken up and Lophotrochozoa including Platyhelminthes form a well-supported monophylum (posterior probability 0.96).

The K2P distances [ 23] among seven ingroup taxa calculated using MEGA3 [ 24] range from 2.3 to 19.9% for the protein-coding dataset (average 12.8%), from 1.2 to 10.1% for the rRNA dataset (average 6.1%), from 1.3 to 8.7% for the tRNA dataset (average 5.2%), from 5.0 to 18.9% for the control region (average 10%), and from 2.2 to 17.0% for the complete dataset (average 10.7%).

If a suite of EPIC markers worked in one taxon, to predict whether we could use them in other taxa, we calculated the correlation between the amplifiability and the genetic p-distance between the taxa.

To assess the extent of ecological niche similarity and overlap between the fundamental vs. realized ecological niche of the three taxa, we calculated the indices either over the environmental envelope that maximally discriminated each pair of taxa (discriminant analysis, cf. Table 5 and additional file 7), or across the set of sampled locations (Table 6).

Our data display a well-known distortion between pollen taxa percentages calculated from palynological slides and current vegetation cover on land, with a particular overestimation of arboreal taxa as well as an underestimation of herbaceous ones, especially of cereal crops that represent a major component of the regional continental vegetation.

To estimate evolutionary distance, pairwise distances between all taxa were calculated with the DNADIST of the PHYLIP 3.6 package.

Potential distributions of taxa are calculated using the maximum entropy (Maxent) model [55], with a set of bioclimatic variables and species presence data as inputs.

For each of these 10 taxa, we calculated mean longitudinal ground contact and mean percentage cover of sections in contact with the ground of all logs along which it appeared.