Additional file 7: Table of subcellular targeting predictions.
We used two miRNA target predictions for this analysis and performed correlation analysis of the RR values obtained from each of the two target predictions.
The Integromics platform supports two miRNA target prediction methods.
Target predictions were run for all predicted miRNAs.
The conventional in silico target prediction approach [10] is extended in this study by using protein domain annotations to extrapolate from non-plasmodial target predictions to protein target predictions in P. falciparum.
For comparison we successfully ran target predictions for CIS22a using six of the fourteen target prediction web-based tools listed in Table 1.
MiRNA target predictions for human 3'-UTR sequences were downloaded from the web site of the RNA22 miRNA target prediction tool [11] as of August 2008.
Sign predictions can only be evaluated for correct effector-target predictions.
The miRBase Targets Release Version v5 is comprised of gene target predictions for 711 human miRNAs.
Results of the miRNA-target predictions are shown in Tables 5 and 6.
