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Self-boosted Percolator is specifically designed for X!Tandem results coming from the TPP.
X! Tandem results were further validated by PeptideProphet [ 45] at a confidence level of > 95%%.
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The blue15 and yellow18 RHE often occur in tandem resulting in double hairpin and, in some cases, multiple hairpin structure.
Both EEG and EMG powers from the same epoch were connected in tandem, resulting in combined EEG/EMG data.
We have identified a 40 kb genomic region within the Rhox cluster that is duplicated eight times in tandem resulting in the presence of eight paralogues of Rhox2 and Rhox3 and seven paralogues of Rhox4.
Performances of the iterative decoding scheme involving the Chase-like algorithm are evaluated and compared to tandem decoding results.
For calculating spectral counts (SpCs) at the protein level, triplicate X!Tandem [48] results for each patient were simultaneously analyzed with PeptideProphet and the single output file was subjected to ProteinProphet [49].
In total, 11,297,594 (mostly doubly charged and triply charged) X! Tandem search results were obtained.
Compared with single-step purification, tandem purification results in fewer contaminants.
The Mascot search engine (version 2.1; Matrix Science, London, UK) was used to analyze all of the tandem MS results.
Tandem MS results were also subjected to Mascot MS/MS ion search (Matrix Science Ltd., London, UK; http://www.matrixscience.com).com
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