Sentence examples for taking the alignment from inspiring English sources

Taking the alignment and phylogenetic analysis of different parts of this gene at face value, it would appear that P. macrorhiza line B acquired atp1 by HGT twice, with an atp1 gene acquired from the P. sericea lineage converting a short central segment of the atp1 pseudogene acquired from Cuscuta.

This software takes the alignment as input and generates ab initio phylogenetic trees.

MethGo is a Python software that takes the alignment file from both WGBS and RRBS as the input data.

All 454-sequenced reads from the genomic library and other pools were assigned to regions in the K-12 genome by taking the best alignment found by vmatch [13].

We aligned each sequence to the E. coli K-12 genome using vmatch [13], taking the best alignment found with an E-value of less than 1e-10, if any.

After removing the unsolidified resin, a 10 μm cell was formed by adding a PVA coated glass slide with parallel rubbing and infiltrated with the liquid-crystalline monomer mixture taking the nematic alignment along the rubbing.[ 25] The LCE actuator, being the 60 × 30 × 10 μm walker's main body, was made by DLW, with one side gripped by the anchors.

Consensus sequences for select TEs were assembled in an iterative fashion, using successive rounds of mapping reads to existing element sequences to extend element alignments and then taking the consensus of these alignments.

It measures the similarity between every row (column) and then takes the maximum alignment error as the distance.

Due to these characteristics, we had to take the multireads alignment into consideration to estimate these genes expression levels in a satisfactory manner (Additional file 4: Table S3).

Also calculated was a weighted alignment score for both BLASR and LAST alignments, taking the number of reads multiplied by mean identity (Additional file 1: Figure S4).

For each transcript, a conservation score per base were calculated by taking the average conservation in the alignment region and divide by the length.