Sentence examples for taking alignment from inspiring English sources

We also demonstrate the importance of taking alignment uncertainty into account when using such information.

Based on the findings, a map of the research process is drafted taking alignment efforts and an estimation of the contributions into account.

Thus, the number of branches supported in only one of the two models at each level of PP is 4, 3, and 2. Since the joint model balances substitution and indel information as well as taking alignment ambiguity into account we assume that these differences represent an improvement in the accuracy of estimation.

SAMtools takes alignments in the generic SAM (Sequence Alignment/Map) format, which is natively supported by various short read aligners.

It takes alignments to the genome as input in sequence alignment map (SAM) or binary alignment map (BAM) format [ 10].

The Hybrid Scaffold and Stitch tools for genome finishing both take alignments from the BioNano RefAligner as input.

Alternatively, Grape can also take read alignment files as input, rather than raw read files.

The Ensemble gene ID of ENSG00000108883 is an elongation factor Tu GTP binding domain (EFTUD2) which possesses an average sequence identity of 80% by taking pairwise alignment between human species and other 11 model species individually.

The Ensembl gene ID of ENSG00000069329 is a vacuolar protein sorting gene (VPS35) which possesses an average sequence identity of 80% by taking pairwise alignment between human and the other eleven model species.

To eliminate redundancy in the obtained alignments, the following steps were taken: Only alignments with an alignment e value of less than 10− and 10−15 for genomic and transcriptomic data were considered.

MMM takes each alignment and constructs a composite alignment, which is then used by Modeller [17] to construct the 3D model of lamprey ER.