Sentence examples for takes the alignment from inspiring English sources

This software takes the alignment as input and generates ab initio phylogenetic trees.

MethGo is a Python software that takes the alignment file from both WGBS and RRBS as the input data.

Taking the alignment and phylogenetic analysis of different parts of this gene at face value, it would appear that P. macrorhiza line B acquired atp1 by HGT twice, with an atp1 gene acquired from the P. sericea lineage converting a short central segment of the atp1 pseudogene acquired from Cuscuta.

It measures the similarity between every row (column) and then takes the maximum alignment error as the distance.

In this instance, NanoOK takes the highest scoring alignment and merges this with any alignments for the same reference that map close to the initial alignment.

All 454-sequenced reads from the genomic library and other pools were assigned to regions in the K-12 genome by taking the best alignment found by vmatch [13].

We aligned each sequence to the E. coli K-12 genome using vmatch [13], taking the best alignment found with an E-value of less than 1e-10, if any.

Due to these characteristics, we had to take the multireads alignment into consideration to estimate these genes expression levels in a satisfactory manner (Additional file 4: Table S3).

After removing the unsolidified resin, a 10 μm cell was formed by adding a PVA coated glass slide with parallel rubbing and infiltrated with the liquid-crystalline monomer mixture taking the nematic alignment along the rubbing.[ 25] The LCE actuator, being the 60 × 30 × 10 μm walker's main body, was made by DLW, with one side gripped by the anchors.

For the alignment, HIA takes the hybrid index and a query FASTQ file as inputs, and outputs the mapped and unmapped alignments in SAM format.

All changes are recorded in the release history since the launch of EMPOP 2. SAM is a valuable contribution for mtDNA database queries as it takes the burden of sequence alignment from the user.