Sentence examples for takes an alignment from inspiring English sources

The SIA algorithm takes an alignment as input.

Simulfold takes an alignment as an input and simultaneously calculates a structure including pseudoknots, a multiple-sequence alignment and an evolutionary tree by sampling from the joint posterior distributions (Meyer and Miklos, 2007).

Next, a subroutine GREEDY_ALIGNMENT (A, F') takes an alignment A and a set of fragments F' as arguments and returns a new alignment A' ⊃ A by adding fragments from the set F' in a 'directly' greedy fashion.

We take an alignment approach to the construction of our tertiary structure dataset from the quaternary structure data.

This method takes an initial alignment and constantly makes changes to it.

It takes a certain alignment of political and geographical factors to give birth to a tradition like this one.

KNetFold is a machine learning method, which takes a sequence alignment as an input and outputs a consensus structure allowing pseudoknots (Bindewald and Shapiro, 2006).

To the best of our knowledge, TUIUIU is the first filter for multiple repeats based on the edit distance that takes a multiple alignment task into account.

This method takes a multiple alignment M on X as input and produces a set of weakly compatible splits S on X using a simple modification of the split decomposition algorithm.

West of Mitchell Road, NY 96 takes a more southerly alignment than the canal as it enters the densely populated village of Pittsford and meets the northern and eastern termini of NY 64 and NY 252, respectively, at the intersection of Jefferson Road and South Main Street.

Ancestral reconstruction (ASR) takes a multiple sequence alignment (MSA) (nucleotides or proteins), together with a tree representing the sequences in the MSA and calculates the most likely ancestral sequence at each node of the tree.