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Use of PSI-BLAST and/or substitution matrices that take divergence into account, such as implemented in the OMA project using PAM matrices, could help eliminate these effects.
This is well known, and an old criticism of the orthology concept is that it does not take divergence into account.
The method is easily adapted to take divergence time information into account, e.g. from fossil data [ 34, 35], by restricting a speciation to a specific interval or using a prior distribution on the interval.
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We took divergence dates from a recent review of the fossil evidence [25], taking the average of the maximum and minimum dates.
We took divergence dates for the major groups Elasmobranchii, Actinopterygii and Amphibia from the TimeTree database (Hedges et al. 2006).
He said activists dissect statements and take any divergence as a sign that something is amiss.
In order to show this mode coupling, take the divergence of Eq. (14), assuming the conductances are constant and the ambient magnetic field is vertical (Lysak and Song, 2006), (23).
As the continuity equation (30) is not suitable for the shooting method, we take the divergence of the Navier-Stokes equation, and for the pressure perturbation, we solve the resulting second-order equation: i S - 1 - 4 3 k ( V ̄ - c ) d 2 d x 2 - k 2 p ̂ = ik S - 1 2 d V ̄ d x v ̂ x - k ( V ̄ - c ) 2 p ̂ + 4 3 k d 2 V ̄ d x 2 p ̂ + 2 d V ̄ d x d p ̂ d x. (36).
Taking the divergence of Eq. (32), the equality ∇·∇×A np =∇·B np =0 is automatically satisfied.
The higher order Laplacian is derived by taking the divergence of a particle-based gradient model (Monaghan, 1992) [18].
Since (nablacdot u=0), it yields by taking the divergence to (4.2 1 begin{aligned} Delta p=-nablacdot ucdotnabla u)+nabla^{2}:bigl( mathbb{S}+sigma^{nd}bigr). end{aligned} (4.28).
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