Sentence examples for take an alignment from inspiring English sources

We take an alignment approach to the construction of our tertiary structure dataset from the quaternary structure data.

The SIA algorithm takes an alignment as input.

Next, a subroutine GREEDY_ALIGNMENT (A, F') takes an alignment A and a set of fragments F' as arguments and returns a new alignment A' ⊃ A by adding fragments from the set F' in a 'directly' greedy fashion.

Simulfold takes an alignment as an input and simultaneously calculates a structure including pseudoknots, a multiple-sequence alignment and an evolutionary tree by sampling from the joint posterior distributions (Meyer and Miklos, 2007).

Tfold and hxmatch take a sequence alignment as the input.

Several of these methods take a sequence alignment as an input.

To the best of our knowledge, filters for multiple repeats that take a multiple alignment condition into consideration have been addressed only in [ 15, 16].

Some studies have suggested that the main role of the conserved Tyr is to stabilize the cluster through these aromatic and H-bond interactions and not to have any profound effect on the reduction potential; however, because the Tyr in different proteins tends to take a different alignment, this hypothesis cannot be generalized to all HiPIPs.

This method takes an initial alignment and constantly makes changes to it.

It takes a certain alignment of political and geographical factors to give birth to a tradition like this one.

KNetFold is a machine learning method, which takes a sequence alignment as an input and outputs a consensus structure allowing pseudoknots (Bindewald and Shapiro, 2006).