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When tag count was zero the "zero substitution value" 0.345 was assigned before calculation of R. The annotation of SAGE tags (assignment to the corresponding mRNA and protein) is frequently made by interrogating databases of virtual tags extracted from unigene entries [ 26, 27, 42- 44].
Fig. 6 An illustration of tags assignment to different tokens.
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As an illustration of tag assignment the following example may be given.
"Unique tags", whose best sequence matches were located on unique positions in the genome, were used in subsequent tag assignment analysis for high accuracy.
Alternate transcript processing can be detected due to the precision of SAGE tag assignment [ 18].
The tag assignment process was implemented in perl and scripts are available on request.
Nevertheless, the UTR-derived anomaly seems contributing to the impaired tag assignment in a similar way as the sequence anomaly.
(C ) Segmented 24 Å TBC-DEG map with all unique segmented domains based on tagging assignment of the TBCE N-termini.
This indicates that at distances over 5000 bases the tag assignment to the neighboring transcripts is becoming increasingly ambiguous, and the tags might in fact correspond to entirely missed genes.
The requirement for inter-annotator consensus provides a unique and reliable tag assignment to each fragment, and supports a clean training/test set, but these advantages come at a price: inter-annotator consensus on a fragment may imply that the fragment is easier to automatically classify, resulting in an easier classification task for a machine learning method.
Examples include crowd-sourced tag assignments for software packages [11], product categories for Amazon copurchasing networks [12], declared group membership for various online social networks [13, 14] and publication venues for co-authorship networks in the computer science literature [13].
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