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In addition to the above analysis, ten syntactic models were developed using proteins conserved in the three sequenced ascovirus species (SfAV1a, TnAV2c, and HvAV3a) and twelve iridoviruses [ 36].
We designed two syntactic models (see Materials and Methods), which together were able to specifically align all MCP sequences of the four virus families.
To reach our detection objectives, we therefore constructed syntactic models that only included the most conserved positions and their variable spacing using WAPAM at the website.
Construction of syntactic models: Conserved amino acid blocks and positions described previously [ 15, 22] and with new data sets were verified or determined using MEME at http://meme.sdsc.edu/meme/meme.html.html
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Formal syntactic modeling co-exists with ordinary interpretive practice, in which we ascribe intentional contents to one another's mental states and speech acts.
X73PHD provides a robust syntactic model and a comprehensive terminology, but it places limited emphasis on security and on interoperability with IHE-compliant systems and frameworks.
It can be useful to have a high-level model of the normal behavior of the SUT and also a low-level syntactic model that models the good and bad values of each input and is used for robustness testing.
A classic reference in this kind, away from the syntactic model, is Oppenheim and Putnam's "The Unity of Science as a Working Hypothesis" (Oppenheim and Putnam 1958; Oppenheim and Hempel had worked in the 1930s on taxonomy and typology, a question of broad intellectual, social and political relevance in Germany at the time).
The procedures were done until we were only able to detect exact match with the syntactic model.
Syntactic model for orthologs of the SfAV1a ORF061 in ascovirus, iridovirus, phycodnavirus and asfarvirus genomes: [FWY]-x(3 -[ILMVFYW]-[ILMVFYW]-x(3 -[ILMVFYW]-[ILMVFYW]-xYW]-x(2)-[ILMVFYW]-x(3 -[ILMVFYW]-[ILMVFYW]-x-[RHK]-x(2)-[ILMVFYW].
The morphological-syntactic classifier models morphological-syntactic classes as elements in PPM-C.
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