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We use new swath bathymetry data acquired during the RV Sonne cruise GEOPECO and complement them with swath data from adjacent regions to analyse the morphotectonics of the Peruvian convergent margin.
For extraction of SWATH data and peptide quantification Spectronaut 3 (Biognosys) and Skyline were used.
It specifically facilitates manual and automated analysis of SWATH data and other data-independently acquired MS data using assay libraries.
Processing SWATH data with Spectronaut (V. 3.0.337, Biognosys), we compared the performance of DDA with SWATH in protein detection and label-free quantification.
(B ) The 'Advanced Peak Picking Models' was used to work with decoy transition groups and for large-scale, automated SWATH data analysis.
The text file is then uploaded to YPED, where these results are merged to generate a report table as shown for SWATH data in Figure 4.
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The software tools described in the section below enable (1) systematic annotation of peptides to their respective HLA allele, (2) visualization of HLA peptidomic datasets, and (3) generation of HLA class I allele-specific peptide spectral libraries, which can be converted into high quality assay libraries for the processing of SWATH-data.
This allows MAVEN to gather a north-south swath of data with each pass.
She then used RNA sequencing to capture a huge swath of data on genes in the bone.
The swath bathymetry data show that the surface of the fan is prominently gullied and channelled with channels extending downslope from a series of shelf-edge incising gullies.
Here we present a detailed examination of the Madeira Channel System, offshore northwest Africa, using shallow seismic profiles, swath bathymetric data and a suite of sediment cores.
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