Finally, to investigate the role of alternative splicing (AS) in response to salt stress, we conducted a survey of transcript isoforms across the four libraries and examined six common types of 'alternative splicing events'.
Our global survey of transcript variants based on the 20 poplar xylem transcriptomes identified 199,096 splice junctions, 118,751 of which were known junctions and 80,345 were new junctions absent in the annotated genome (Additional file 3).
As such, they should not be ignored in surveys of functional transcripts or other genomic studies.
As such they should not be ignored in surveys of functional transcripts or other transcriptomic and genomic studies.
Although this analysis cannot completely rule out the possibility that reverse transcription occurred from unedited transcripts, this seems unlikely to have independently occurred for all three genes because the majority of edited sites are found fully edited in surveys of the mitochondrial transcript pool [ 47, 50, 51, 53].
An expression survey of gene transcripts revealed amplifications of RAD51C, S6K, PAT1 and TBX2, as well as a novel highly amplified expressed sequence tag on the 17q23 amplicon.
An authentic survey of the transcript-level response of the diabetic endothelium in vivo is key to understanding diabetic cardiovascular complications such as accelerated atherosclerosis and endothelial dysfunction.
An additional class of ncRNAs longer than 200 nucleotides (long intergenic ncRNAs (lincRNAs)) were found in a survey of human transcripts, and some exhibited enhancer function [ 27].
Transcript surveys of additional salmonid species included 4,800 7,500 clones sequenced from each of chinook salmon, sockeye salmon, brook trout, grayling and lake whitefish.
First, surveys of the host nuclear transcripts in L. chlorophorum detected putative plastid genes of both green algal and peridinin-containing dinoflagellate origins.
