Sentence examples for survey assembly from inspiring English sources

A draft genome survey assembly and comprehensive transcriptome assembly for Tanjil [ 23] were searched to confirm the sequences of these conglutins and to potentially identify any additional conglutins with sequence similarity (<1e-5).

To identify wheat (Triticum aestivum L). genes encoding components of the GA biosynthetic and signalling pathway, sequences from Brachypodium (Brachypodium distachyon L ., identified by BLASTP at www.phytozome.org using rice (Oryza sativa L). peptide sequences [ 31] as queries, were used to search the IWGSC chromosome arm survey assembly at urgi.versailles.inra.fr.inra.fr

In the case of the β conglutins, sequences for BETA1, 2, 5 and 7 were identified, whereas BETA3, 4 and 6 appeared to be mis-assembled in the survey genome assembly and formed contigs with alternate isoforms in the transcriptome assembly, which is most likely due to their high sequence similarity 85-999 % identity) [ 10].

For T. b. brucei TREU927, the chromosome assemblies, genome survey sequence assemblies and individual sequence reads were screened and for T. b. gambiense Dal972, both contigs and individual sequence reads were screened.

The FST contigs were queried against the MAGI4.0 release of the maize genome survey sequence assembly as well as release 16.0 of the Zea mays gene index (ZMGI) using BLASTN searches [ 27, 28, 45].

Whoopi Goldberg makes an rather impenetrable statement as she surveys the assembly from the stage.

While this survey of assemblies is not necessarily exhaustive, we believe it to be thorough for metaparticles accessible with high yield through the procedures we have described.

As there is no standard methodology to detect oligomeric assemblies, we empirically settled on a method that was the most sensitive in our hands, and also would enable us to survey oligomeric assemblies in multiple brain lysates.

In addition, URGI hosts the IWGSC sequence repository that provides access to the survey sequence assemblies of the 21 chromosomes of Chinese Spring (http://urgi.versailles.inra.fr/Species/Wheat/Sequence-Repository).

Recently released flow-sorted chromosome arm based survey sequenced assemblies of all wheat chromosomes will be very useful in alien chromosome based genome specific SNP discovery (https://urgi.versailles.inra.fr/download/iwgsc/). Mapped arm- and genome-specific SNP markers can be used to identify alien chromosome segments with a gene of interest for pre-breeding in wheat improvement programs.

Further information about the surveyed genome assemblies are summarized in Additional file 5: Table S2.