Sentence examples for surrounding atoms from inspiring English sources

To turn these into residue-level predictions, high-confidence atomic predictions were treated as "seeds", and any surrounding atoms of even moderate confidence were assigned to be part of an atomic interacting patch.

But when light travels through water, glass, or indeed anything other than empty space, then the electrons in surrounding atoms slow the light down.

Crystallization is essentially two processes: nucleation (the adoption of a patterned arrangement by a small number of atoms) and growth (extension of that arrangement to surrounding atoms).

The answer is that, if there are only a few surrounding atoms or molecules, the fragments escape their initial cage, and, if the energy of the light is high enough, at least one of the fragments escapes.

A polaron behaves as a negatively charged particle with a mass greater than that of an isolated electron because of its interaction with the surrounding atoms of the solid.

The substructure incorporates the surrounding atoms and bonds, and increases the discriminating capability between active and inactive compounds.

The whole construct is then checked for steric clashes (defined as atomic distances of <4.0 Å) with any surrounding atom.

Also worth noting is the fact that the B-factors of the calcium ions, as well as the surrounding atom clusters (oxygen atoms from residues that coordinate calcium), in our simulated annealing data sets substantially decrease with increasing CaCl2 soaking concentrations, which again correlates positively with increased calcium occupancy.

During the transformation, the planar 2D morphology can be normally retained, but the coordination of M atoms in reference to the surrounding X atoms becomes octahedral [61].

The Si O tetrahedron is constructed by one central Si atom and four surrounding O atom, in which one is the Oa atom and the other three are the basal O atoms (Ob).

Each M atom is prismatically coordinated by six surrounding X atoms [59].