Exact(2)
The sequence data supporting the phylogenetic tree of this article was deposited in the permanent and resolvable resource locator TreeBase: http://purl.org/phylo/treebase/phylows/study/TB2 S16290.
The data set supporting the phylogenetic tree presented in Additional file 1: Figure S1 of this article is available in the [Dryad] repository, [unique persistent identifier doi 10.5061/dryad.7d039 and hyperlink to datasets in http://datadryad.org/].
Similar(58)
The results of OrthoMCL analysis supported the phylogenetic tree at the protein level.
These analyses support the phylogenetic tree shown in Fig. 2, in which the eukaryotic Kir's and prokaryotic KirBac's form two distinct families.
The obtained topology, together with a maximum parsimony analysis (data not shown), supports the phylogenetic tree proposed by Aguinaldo et al., with the exception of Schistosoma japonicum (Platyhelminthes) that clustered within the Ecdysozoa represented by Arthropods and Nematodes, rather than Lophotrochozoa (represented by Molluscs and Annelids).
This dichotomy was most robustly supported in the phylogenetic tree of mcyG (NJ BP100%, Bayesian PP 100%), whereas it was moderately supported in the mcyD and mcyJ phylogenies.
The presence of four different subgroups of PAF-cluster proteins is also supported by the phylogenetic tree.
In contrast, only five groups were supported in the phylogenetic tree of amino acid sequences (Fig. 2).
The maternal origin of the four hybrid individuals is highly supported in the phylogenetic tree with posterior probabilities of 1 on the respective ancestral nodes.
A1 has been described to be closer related to V. albo- atrum than to V. dahliae, which is supported by the phylogenetic tree analysis (Fig. 1b).
Traditionally, an evolutionary scenario involving HGT was considered to be well supported if the phylogenetic tree for the gene in question disagreed with the accepted organismal tree (Gophna et al. 2006).
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