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Partial support is computed as a linear function of the fraction of the extension that is covered by the right reads.
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Branch support was computed using aLRT (approximate likelihood ratio test).
Branch support was computed from 1000 bootstrap (BT) replicates, with three random taxon addition replicates per bootstrap replicate.
Branch support was computed using an aLRT (approximate likelihood ratio test) based on a chi-square distribution.
The total score for emotional support was computed by adding all four items, and ranges between 1 16.
Posterior branch support was computed using both approximate Likelihood Ratio test (aLRT) (Anisimova and Gascuel 2006) and bootstrap analysis (with 100 replicates).
Statistical support was computed using the GoStat web server (Beissbarth and Speed 2004), employing a stringent cutoff of P ≤ 0.001 and Benjamini correction for false positive detection.
Similarly, the topology was nearly identical when two free-living espsilon-Proteobacteria (Sulfurovum NBC37-1 and thermophilic Nitratiruptor SB155-2 [ 40],) were added, and the tree recomputed with PhyML v3.0; for this tree, the minimum of SH-like and chi2-based support was computed instead of bootstrap support [ 69].
Branch supports were computed using the aLRT-SHlike method [ 91].
For all phylogenetic analyses, branch supports were computed over 500 bootstraps.
Branch supports were computed using the aLRT-SHlike method, and those under 0.70 were discarded.
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