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The multivariate models are supplied in supplementary format (Supplementary Table 3).
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Users can enter structures in dot-bracket format (Supplementary Material Sections S1.3, S1.6 and S1.7).
X-ray and neutron crystallographic refinement files in CIF format; supplementary Figures S1 S17 and Tables S1 S18.
RNAi clones were retrieved from the library and re-arrayed into 96 well format (Supplementary File 2).
The obtained results of the dendrite and spine analysis can be exported to an Excel format (Supplementary Fig. S1).
The full model is shown in Figure 2 and the corresponding stoichiometric model is provided in the supplementary webpage (SBML format).
In addition to images superimposed with the fitted dendrites and spines, the results obtained by Spiso can be exported to an Excel format (Supplementary Fig. S1).
An additional feature of the BCML implementation was the ability of mapping differentially expressed genes (DEGs) directly inside the pathway format (Supplementary Material).
These include the tag alignment parameters and the sequence of contaminating sequences, which will be highlighted in the tabular format (Supplementary Material).
HCT-116 and HKE-3 cells were screened in parallel, each in quadruplicate, using a library of more than 7 000 siRNA pools targeting the druggable human genome, employing the activated effector caspase activity and cell number assays in a HTS format (Supplementary information, Figure 2A).
Typically, Z-stacks consisted of 13 steps, 333 nm apart.> -wrap-foot> Raw 16 bit images were converted into FITS format (Supplementary file 1 contains batch FITS converter macro for ImageJ) and calibrated in 32-bit floating-point space using bias, thermal and flat-field frames (AIP4WIN, Berry and Burnell, 2011).
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