Sentence examples for supplementary blast from inspiring English sources
Consequently, supplementary BLAST identifications were performed with the nt (nucleotides) and EST (expressed sequence tags) databases (Benson et al. 2013).
However, when only one ZF motif was used for supplementary BLAST analysis against the P. trichocarpa Phytozome database, five poplar ZFPs with one QALGGH finger were detected.
Supplementary BLAST parameters used were application of the Dust simple sequence filter and setting hspsepsmax = 1000, appropriate for use against very large subject sequences.
The openSputnik database, on the other hand, has extra information available, including the ESTs flagged as low quality and excluded from the analysis in this report, a number of supplementary BLAST fields, and UniGene functional annotations based on mappings of Swissport and InterPro to GO [ 54].
Supplementary data 2 BLAST results and annotations.
Primers were designed using Primer Blast (supplementary data, table 1).
Supplementary files 2 (Blast scores) and 3 (accession numbers) should be combined.
Two hundred and seventy putative orthologs with at least 300-bp alignment overlap among these taxa by reciprocal best blast hits (supplementary table S1, Supplementary Material online).
To further support this potential role in wing formation/reduction, we found four other insect species with a large rdx-like gene family: Nasonia vitripennis (Werren et al. 2010), Lygus hesperus (Hull et al. 2013), Microplitis demolitor (Burke and Strand 2012), Acyrthosiphon pisum (Richards et al. 2010), supported by BLAST results (supplementary table S11, Supplementary Material online).
Snake1 CR1 LINEs are also notable because our data confirm previous speculation that they occur at high-frequency throughout phospholipase venom genes in viperid snakes (Ikeda et al. 2010), numerous other venom genes in viperids and elapids (based on Blast analysis; supplementary table S10, Supplementary Material online), and in HOX gene clusters of colubrid snakes (Di-Poi et al. 2010).
Cystatin F also partially colocalised with the cathepsin C substrate, granzyme A as well as with perforin and LAMP1 in human CD8+ T-cell blasts (Supplementary Figure S4B).
