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The supplementary alignment (S2) only shows one Tlr protein (which one is it?).
The alignment consisted of 538 nt coding for 179 amino acids using the invertebrate mitochondrial code (Supplementary Alignment A1).
Supplementary alignment S1, figure S1, and tables S1 S9 are available at Genome Biology and Evolution online (http://www.gbe.oxfordjournals.org/).org/
Supplementary table S1 and supplementary alignment information are available at Genome Biology and Evolution online (http://www.gbe.oxfordjournals.org/).org/
This significantly altered the length of the array as well as the species-specific consensus sequence (see fig. 3 C and supplementary alignment S2, Supplementary Material online).
All putative H. annosum SNPs/InDels detected by comparative sequence analysis of the six genomes were confirmed in the genotypes for which individual loci were sequenced (see supplementary alignment S1, Supplementary Material online).
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Supplementary Alignments are available at Genome Biology and Evolution online (http://www.oxfordjournals.org/our_journals/gbe/).org/our_journals/gbe/
Both control alignments are available as supplementary information (Alignment S1 and S2).
Furthermore, the reannotated trnNs of Solenopsis and L. pallens share the GTT anticodon with all of their counterparts (see the supplementary multiple alignment of trnNs, Supplementary Material online).
Based on agency theory, we argue that the base compensation scheme results in a varying risk distribution to the hospital and physician, on which supplementary economic alignment can be realized by a financial agreement (e.g. gainsharing and physician ownership).
To solve the disagreement with the previously published phylogeny, ML phylogeny reconstructions were performed with a subsample of 23 groups of orthologous proteins and with its concatenate alignment (supplementary file 1: supplementary fig. S1, Supplementary Material online).
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