Sentence examples for super alignment from inspiring English sources

Core sequences from each species are concatenated and the super alignment is used in phylogenomic analysis.

All alignments were concatenated in a super alignment of 82,950 base pairs.

A super alignment of the fungal proteomes was constructed with the Hal pipeline [ 75], allowing for no missing data.

Their alignments, as constructed in the phylome, were then concatenated to form a super alignment that contained 1,479,842 amino acid positions.

Within the provided additional file is a super alignment including many major families within the classical ubiquitin superfamily, as well as individual alignments of all newly-discovered β-GF domains.

For the analysis of phylogenetic relationships of the four A. pullulans varieties and related species, a super alignment of the selected fungal proteomes was constructed with the Hal pipeline [ 175], allowing for no missing data.

For each species, back alignments of CEGs or protein alignments were concatenated in the same order to generate super alignments.

Individual alignments were parsed by minimum alignment length and concatenated using FasConcat [ 75] for generation of super alignments.

The super alignments were loaded into TOPALi (Milne et al. 2009) for model selection and maximum-likelihood tree generation using RaxML (WAG/GTR GAMMA) with 100 bootstraps.

Aligned clusters were concatenated to generate super-alignments that were used to build maximum likelihood phylogeny tree.

The 218 single alignments were concatenated to form a super-alignment with 192,102 aa positions.