Comparison of the expression values expressed as summed fragments per kilobase of transcript (exon model) per million mapped reads (FPKM) of replicates R1 and R2 for each sample showed the Pearson's correlation coefficients above 0.99, except for the only sample in which the growth phenotype was present: AtCHR23 over-expression in long-day conditions.
Downstairs, the mood dissipates and the sum fragments into its parts, but there is a lovely smeared and spattered version of The Battle of San Romano by Uccello.
This insertion size of each BAC clone is estimated by summing all fragments after restriction enzyme digestion using EcoRI or BamHI.
Therefore, we construct a BLSOM in which the frequencies of a pair of complementary pentanucleotides (e.g., AAAAC and GTTTT) in each fragment are summed [ 17].
Therefore, we constructed a BLSOM, for which the frequencies of a pair of complementary oligonucleotides in each fragment were summed up (e.g. AAC and GTT; abbreviated as AAC+GTT).
The mapped ChIP-seq datasets were downloaded from T2G GIS DB (http://t2g.bii.a-star.edu.sg; see also NIH GEO ID GSE 11431).The extended ChIP-seq DNA fragments were clustered and the number of overlapping fragments were summed at each locus and used to construct empirical frequency distribution of TF-DNA binding.
Next, for each of the mixed lattice points thus selected, we listed all pairs of NcCOGs having more than four fragments and summed up the pairs for all of the mixed lattice points.
The number combinations of Amplicon X Unique Fragment Length Distributions is the number of unique fragment length distributions summed over all variable amplicons.
For PCR-RFLPs, the software reports the total number of unique combinations of primer pair sequences and restriction enzyme(s) that yield variation in fragment length distributions among the genomes, as well as the number of unique fragment length distributions (summed across primer pairs and restriction enzyme combinations).
The total number of times that each restriction enzyme created a different distribution of fragment lengths was summed across all amplicons in the PCR-RFLP analyses.
It was found that the π system fragment point descriptors could be merged for the two fragments (summing their values - π total number descriptors) without changing results (201 descriptors).
