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Gene expression values were calculated from the PM probes with the median polish summary method [27].
Data were analyzed with the Affymetrix Expression Console tool using the Probe Logarithmic Error Intensity Estimate summary method and sketch quantile normalization (http://www.affymetrix.com/analysis/index.affx).affx
Normalization was performed with the AffyPLM package in BioConductor (v2.4), using RMA background correction, quantile normalization, and the Tukey biweight summary method.
NJst is a summary method that has two steps.
Interchip normalization used the qspline algorithm with median polish summary method.
Gene expression values were calculated from the PM probes with the medianpolish summary method [ 54].
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Mirarab, S., Bayzid, M. S. & Warnow, T. Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting.
The police here, known for their summary methods, say they have already arrested around 100 people in connection with Sunday's killings.
Therefore, alternative summary methods should be explored.
However, all summary methods we explored were impacted by gene tree estimation error.
ASTRAL was generally more accurate than all the other summary methods (Fig. 2).
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com