For testing, the above 10 sets of upstream sequences were shuffled using the 'shuffleseq' program in the EMBOSS software suite [ 40] (the program shuffles individual sequences in each set, while maintaining composition).
On the same day, in Washington DC, Parada gathered his notes and shuffled into a suite of nondescript meeting rooms in the World Bank's J building, across the street from its main headquarters on Pennsylvania Avenue.
Equifax further shuffled its executive suite, including the hiring of a new chief information security officer Jamil Farshchi and former lawyer turned "chief transformation officer" Julia Houston to oversee "the company's response to the cybersecurity incident".
The GC-proportion was checked with the help of program called "geecee" from the collection of program suite EMBOSS [ 51] after shuffling the promoter sequences and found to be similar.
But to stay in charge, those insiders need a way to deliver to the whole country, not just the narrow sliver smart and lucky enough to shuffle between the C-suite and the Oval Office.
Dinucleotide shuffled sequences were generated using the dinucleotide shuffling script in the MEME Suite [ 35].
Enrichment of p63 binding sites in clustered epidermal enhancers was determined by randomly shuffling the clustered enhancers across the genome using the "bedtools shuffle" command from the BEDTools suite [ 76], excluding unsequenced genomic gaps larger than 10 kb.
For chi-square tests to determine whether the numbers of NRSE within 100 kb of ncRNA and protein-coding genes were greater than expected by chance, we estimated expected counts by shuffling the coordinates of the human NRSE motifs using the shuffle program from the BedTools suite.
[A18.] Deutsche Bank Shuffles Ranks Deutsche Bank shuffled the ranks in its executive suite, putting more power into the hands of two prominent investment bankers in London, but also naming a German banker to a visible role.
Altogether, the genus Aotus comprises a suite of karyotypically rearranged species consequently to extensive shuffling of their chromosome complement respective to other neotropical primates and man.
