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This leads to a suite of clusters of related pathogen-associated proteins.
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Using a suite of clustering methods, Xu and colleagues demonstrate that the Mlabri and Htin share more nuclear variants with each other than either does with surrounding populations.
Sequence manipulation was carried out using either the EMBOSS suite of programmes [122] with clustering using ClustalW [123] or CLC Mainworkbench [124].
Séance combines the alignment extension and phylogenetic placement capabilities of the Pagan multiple sequence alignment program with a suite of tools to preprocess, cluster and visualise datasets composed of many samples.
Several tools exist to perform this task, and MEME in particular is a well-recognized suite for motif discovery (Bailey et al., 2006), but the MEME web suite offers limited usage on large numbers of clusters and subsequent navigation and post-processing of the results.
Maximum likelihood clustering analysis of the blinded results from both labs demonstrates general clustering from the suite of samples from any given subject, again demonstrating the accuracy of the data obtained at each institution.
This paper examines the explicit communication characteristics of several sophisticated scientific applications, which, by themselves, constitute a representative suite of publicly available benchmarks for large cluster architectures.
To this end we explore the advantages of using the NIMROD optimisation suite of programs in conjunction with A cluster computer architecture and the highlight the benefit of visualizing the solution space.
So were clusters of clusters that were only loosely connected.
Similarly, MFS transporters having similar roles clustered together, indicating another suite of duplication events (fig. 8 B).
Script cdhit-cluster-consensus (v.13) of the CD-HIT suite of programs was run to derive consensus sequences for each of the miRNA clusters.
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