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Finally, reactions associated with lipid metabolism constituted another important subsystem group.
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A bar graph and a pie chart (shown in Figure 2) illustrate the distribution of genes connected to the various subsystem groups.
These subsystems group hypothetical protein families solely on the grounds of co-localization patterns conserved across multiple genomes; however, manual subsystem encoding takes automatically pre-computed leads (such as evidence codes) to the next level.
Two decoupling approaches for traceability system design are proposed – rebuilding the relationship in the design matrix via cost reallocation, and organizing interest-aligned subsystems via grouping related players.
Subsystems are groups of genes, or functional roles, acting together in a biological process, e.g. in a metabolic pathway.
A metabolic subsystem is a group of genes that together form a metabolic function or pathway.
Each subsystem represents a group of enzymes aggregated in clusters and dissipatively structured.
Each metabolic subsystem represents a group of enzymes aggregated in cluster and dissipatively structured (the catalytic processes can present both stationary and oscillatory activity regimes).
A typical subsystem is a group of enzymes, transporters, and regulatory components that participate in a metabolic pathway such as folate synthesis or salvage.
We have called metabolic subsystem to these groups of enzymatic associations dissipatively structured.
Trees built from other subsystems tended to group Aquificae with Epsilonproteobacteria, albeit often with other groups such as Euryarchaeota as sisters as well.
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