Sentence examples for substitution rate from inspiring English sources

Branch length in each phylogenetic tree is proportional to the synonymous substitution rate.

The synonymous nucleotide substitution rate (K s) for the paralogues was calculated using codeml (PAML 29.

Substitution rate priors for all the partitions were assigned an independent mutation rate prior according to86.

Table 2 The best-fit nucleotide substitution model and substitution rate estimation for each partitioning schemes.

Specifically, the Ka / Ks metric was designed to measure selection pressure on amino acid substitutions, assuming that the synonymous substitution rate Ks reflects the neutral nucleotide substitution rate.

The substitution rate is indicated as in the bar below.

Finally, the substitution rate was estimated from the selected BSPs.

Using our substitution rate, this expansion began ∼60 kya.

This divergence gave a substitution rate of 0.09% per MY.

We found that the radical n substitution rate (r/R) is slightly lower than the conservative n substitution rate (c/C) in the primate Tetherin gene (Table 2).

The relative substitution rate and ancestral state of each alignment column was estimated using codeml [31] with the Whelan and Goldman WAGG) amino acid substitution rate matrix [32].