Sentence examples for substitution models from inspiring English sources

The best nucleotide substitution models were determined by Modeltest v2.7 (Posada and Crandall 1998).

Briefly, appropriate nucleotide substitution models were assessed using jModeltest 2.1.7 (Darriba et al. 2012).

We used jModeltest 0.1.1 [63] to choose appropriate substitution models.

This study focused on the effects of incorrect substitution models.

The substitution models matched those used for the ML analyses.

Substitution models were evaluated on the basis of Bayes Factors, again, as implemented in Tracer [65].

We performed the analysis using both HKY and GTR substitution models when building phylogenies.

The log-likelihoods, substitution models, and tree topologies were compared among independent runs using SH tests.

Sequence alignments were analyzed using ProtTest 2.2 [33] to obtain appropriate substitution models.

Various nucleotide substitution models were examined and phylogenetic trees of similar topology were generated.

The p-distance and Poisson correction substitution models were used in both tree-building methods.