Suggestions(5)
Exact(10)
Christopher Hill (2002) offers a further, idiosyncratic, alternative and treats the existential quantifier as a substitutional quantifier whose substitution class is the set of all propositions.
A different approach would be to take the existential quantifier as a substitutional quantifier where the substitution class consists of sentences.
Finally, and more crucially, if $A$ is of the form $\Sigma \alpha \ B$, then $A$ is true in $\mathcal{ L}^\Sigma}$ if and only if $B(\epsilon/\alpha)$ is true in $\mathcal{\Sigma}gma}$ for some $\epsifon$ in the substitution cland $C$ assonlyted wifh $\Sigma$.
For a conservative analysis we isolated the Class B from the recently formed Class A Mups, since high levels of gene conversion between paralogues result in artificially low rates of substitution (Class B dS = 0.0175, which is ten-fold lower than that seen in rat/mouse orthologues).
Signatures are displayed according to the 96 substitution classification defined by the substitution class and sequence context immediately 3′ and 5′ of the mutated base.
These values were generally greater for d S α/β comparisons than d N α/β, indicating that S substitutions are the predominant substitution class.
Similar(50)
The two main substitution classes showed an extreme level of mtDNA strand bias.
This generates 96 possible mutation classes (the 6 substitution classes multiplied by the 16 combinations of immediate 5′ and 3′ nucleotides).
However, the ratio of regenerant transitions:transversions (63:68 = 0.92) is very different to that (2.41) seen in sexually propagated plants [ 13], as are the relative frequencies (molecular spectrum) of individual base substitution classes.
For the six-parameter method, models specific to each locus were implemented in PAUP*4.0b10 [ 65], with each substitution classes was weighted based on its substitution rate (Rij, i.e., rate of transformation between nucleotide i and j) estimated with Modeltest3.6 [ 66]: wij = -ln (Rij/∑Ri).
To counterbalance the effect of discrepancy between codon position and nucleotide diversity, a GTR model (which allows for the variation of base frequencies and unique probability for each of the six possible substitution classes) was selected in agreement with ModelTest 3.6 [ 13] for the Maximum Likelihood analyses.
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