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It does not contain a substantial open reading frame and might therefore code for a structural RNA.
Finally, evidence for substantial open reading frames was also used to exclude a limited number of clusters.
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These short transcripts (<500 bp) are spliced but have no substantial open-reading frames, suggesting they may be non-coding RNAs [62].
There was substantial variation in the open reading frame among different species of Cygnus, with 19 synonymous and 33 non-synonymous variable positions found.
During manual editing of CGOB we observed that the original genome annotations contained a substantial number of apparently partial open reading frames, which we merged into full-length gene models.
Even though we complemented our BLAST-based annotations with estimates from FrameFinder, an application used to identify open reading frames, a substantial part of our transcripts lacks reliable estimates of their direction of transcriptions.
Placozoan mtDNA, for example, is twice as large as most animal molecules, ranging from 32 to 43 kilobases, and retains various traits of the non-metazoan outgroups such as substantial intergenic space, introns and large open reading frames less commonly found in other animal mtDNA [ 12, 17].
To our knowledge this is the first time that substantial meta-information including quality values, open reading frame predictions and homology to genes in Arabidopsis thaliana, has been used on tomato sequences to perform a pre-genomic analysis of gene variability and evolution.
Some repeated sequences may result in open reading frames (ORFs) of substantial length.
However, a substantial proportion of these contigs (32%) encoded open reading frames longer than 150 amino acids.
The low and non-homologous proteins of unknown function constitute a substantial percentage, up to 20%~100%, of the open reading frames (ORFs) in many of the currently completed genomes (Han et al. 2004a).
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