Mutagenized strains contain a substantial number of sequence variants.
Even among the longest transcripts (>1 kb), a substantial number of sequences lacked annotated matches in UniProt (range, 6647 12,090 sequences per assembly).
Prior to phylogenetic tree calculation, non-aligned ends have been trimmed and all portions of the alignment where a substantial number of sequences contained gaps have been removed.
Except the Actinobacteria, all taxa with substantial number of sequences assigned to were found in datasets from all three Daphnia species.
Because our sample set included soil and highly decomposed material, we suspected that a substantial number of sequences would not be represented in the reference Greengenes alignment.
A substantial number of sequences from each community had hits to known MGEs: 11,718 of 30,516 sequences from the DK community, 16,156 of 24,956 sequences from the AU community, and 15,530 of 22,662 sequences from the USA community.
Consistent with the findings of many fungal EST projects, a substantial number of sequences could not be annotated due to either a lack of BLAST hits or hits to uncharacterized fungal sequences.
Consistent with many fungal EST projects, a substantial number of sequences could not be annotated due to either a lack of BLAST hits or hits to uncharacterized fungal sequences [e.g., [ 32, 33]].
Although the Expasy neural net provides even wider group separation than HMM80, a substantial number of sequences that should be positive have scores that appear highly negative, indicating a problem with classification accuracy.
