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Exact(9)
Except the Actinobacteria, all taxa with substantial number of sequences assigned to were found in datasets from all three Daphnia species.
Even among the longest transcripts (>1 kb), a substantial number of sequences lacked annotated matches in UniProt (range, 6647 12,090 sequences per assembly).
Because our sample set included soil and highly decomposed material, we suspected that a substantial number of sequences would not be represented in the reference Greengenes alignment.
Prior to phylogenetic tree calculation, non-aligned ends have been trimmed and all portions of the alignment where a substantial number of sequences contained gaps have been removed.
Consistent with many fungal EST projects, a substantial number of sequences could not be annotated due to either a lack of BLAST hits or hits to uncharacterized fungal sequences [e.g., [ 32, 33]].
Although the Expasy neural net provides even wider group separation than HMM80, a substantial number of sequences that should be positive have scores that appear highly negative, indicating a problem with classification accuracy.
Similar(51)
Mutagenized strains contain a substantial number of sequence variants.
Distinct recombination events may produce identical chimeras, thus they may be represented by a substantial number of sequencing reads derived from multiple amplicons.
Importantly, a substantial number of sequencing reads, arranged in phasing, appeared in the regions defined by the two miR390 target sites.
Nevertheless, a substantial number of sequence reads derived from protein-encoding mRNA transcripts that could be assigned to a function and/or to a phylogenetic origin at genus or family level were obtained in this study.
When we began this project, it was not clear whether the specificity of the resolvase catalytic domain could be reduced to the point where a substantial number of genomic sequences could be targeted effectively.
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