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Exact(4)
A subset of the interface was defined by taking into account only atoms around 4.5 Å of the ligand in the protein-inhibitor complexes (see supplementary material Table S3).
A similar PCA analysis was performed with parameters derived from the subset of the interface that is in direct contact with the inhibitor in the protein/ligand structure (Figure 4B).
However, more recently, it was concluded that a much smaller subset of the interface ("hot-spots") [31] for review, might be responsible for the high affinity protein/protein interaction.
As with two other well-studied RNA−protein interfaces, the signal recognition particle and MS2 coat protein, only a small subset of the interface contacts, often designated "hot spots", contribute to recognition.
Similar(56)
For "cut2" = 4.5 Å, some interactions are lost and the raw interface forms a subset of the raw interface obtained with "cut2" = 5 Å. Vice versa for "cut2" = 6 Å the raw interface is bigger.
This protocol, as it is designed to be compatible with the minimum subset of the massage-passing interface functions (MPI), scales well with the number of cores.
The interface specification being partial (incomplete) means that the interface displays only a strict subset of the behaviors allowed by the interface specification.
In our investigation, we did not find K16 in the fetal epidermis, but Bernot et al. reported the presence of K16 within early hair germs of the mouse and in a subset of cells at the interface of the basal and suprabasal cells.
The radiation modes are described as a subset of the acoustic eigenvectors on the structural acoustic interface.
To assess these few amino acids and identify how they provide the interface its capacity to associate, we have developed a simple method which proposes a subset of the amino acids that are in a protein interface and which generates an interaction network of that interface.
Finally, the gray-box value means, the interfaces and a subset of the nodes and arcs of the externally sourced process part are projected.
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