As an additional assessment of assembly quality, we submitted the final set of surviving transcripts to TransDecoder and counted the number of transcripts with complete ORFs (containing start and stop codons).
We also submitted the total set of complete cichlid TAAR sequences to the NetGLY server [ 38], for the identification of potential signal peptides and N-glycosylation sites (Asn-X-Ser/Thr).
We defined significantly up-regulated genes in HER2 versus Lum-A, BLC versus Lum-A and HER2 versus BLC and submitted the identified set of genes to GO analysis (Fig 7C).
In all four semesters, almost all students completed and submitted the short problem sets, because this was a graded assignment (unpublished data).
Hu, an influential economist and advocate of "green revolution", is pressing the government to take a leadership role in Copenhagen by making a public commitment to reduce emissions, and last week submitted the proposal to set a new carbon dioxide goal.
Since user-defined models can not be constructed in SitePrediction, we directly submitted the benchmark data set to calculate the performances of Calpain 1 (SitePrediction 1) and Calpain 2 (SitePrediction 2), respectively.
To determine if SIDER elements are preferentially associated to functionally related genes, we submitted the duplicate-free set of SIDER-associated orthologs to Gene Ontology (GO) term enrichment via the AmiGO browser available from the GeneDB website [ 8, 38].
To perform a platform-independent validation of our IBC signature, we submitted the present data set to unsupervised hierarchical complete linkage clustering using 739 genes in common between the IBC signature and the informative gene list.
By analyzing all the protocols submitted, the workgroup developed a set of criteria to weight variant evidence and a set of rules for combining criteria to arrive at one of the five classification tiers.
Similarly, when reporting on a data set in a research article, authors are required to submit the data set to a database and to supply the corresponding accession numbers in the article; however, the full accession details may not be available at the time of the article acceptance so that the authors are sometimes unable to supply this information.
