Exact(4)
81859 alignment results were obtained from the 3179 submitted structures.
It also allows to dynamically handle any new user submitted structures.
Others provide comparison of entire protein structures (Ausiello et al., 2008) against a number of user submitted structures.
These results show that PDB_REDO can also improve the most recently submitted structures and that current day depositors can benefit from using PDB_REDO pipeline to improve a structure model before it is submitted to the PDB (see for example Peng et al., 2010).
Similar(56)
The redox responses of the complexes confirmed the submitted structure of the complexes.
By the mid 1990s, the editorial office had a system for assembling a validation report of a submitted structure based on the output from several crystallographic applications that were by then able to read CIF directly [19].
The applet converts and stores the submitted structure into a temporary SDF format on the host server.
We also submitted our structures to the RCSB ADIT structure validation tool which outputs a full report on the structure including RMSD values for covalent bonds and angles relative to standard values for nucleotides (Clowney et al., 1996; Gelbin et al., 1996).
The World Monuments Fund, based in New York, put the National Art Schools on its list in 2000 of the 100 most endangered sites, and Cuba submitted the structures in 2003 to Unesco's tentative list of World Heritage sites.
Out of 18 challenges, the author submitted correct structures as lead candidates for 14 challenges and 2nd ranked candidate for four challenges and was declared the winner of this category Pitfalls and challenges encountered during data interpretation are discussed.
To find out the structure of the closest related proteins we submitted the structure to the NCBI protein BLAST tool and performed BLAST against the Protein Database (PDB).
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