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We now also send a second 'reminder' e-mail, 2 weeks after the original one, to those authors who have not completed a submission using the FTYP tool.
The DataUp web service performs the repository submission using the Merritt API, hiding all details of the transfer protocol from the DataUp user.
Its goal is to provide a single point of data submission using the community data standard formats and to promote the data exchange between the main MS proteomics data repositories.
ChIP material was prepared for library submission using the Tru-Seq low input library preparation kit, (despite the use of large numbers of embryos only a relatively small amount of ChIP material could be isolated) and then sequenced using the Illumina platform.
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The site accepts anonymous submissions using the encrypted e-mail service Hushmail.
They will also review social media submissions using the hashtag #TheNew10 as well as comments posted to a dedicated part of the Treasury website.
The NPSC evaluated the content of the mock submissions using the framework for reporting microarray data outlined by the Microarray Gene Expression Data (MGED Societyy in their proposals of the minimum information about a microarray experiment (MIAME) (Brazma et al. 2001; MGED Society 2002).
The highest precision is 0.220 in exact match by Team 238 Run 2 and 0.354 in overlap by Team 183 Run 2. Also when evaluating team submissions using the relaxed measure (i.e. allowing overlaps), on average, the overlap between the text-mined and human-curated sentences was found to be >50% (56.5%).
The second method for evaluating submissions used the scores obtained by the accompanying write-ups describing the algorithms used to build the species-specific networks.
Beyond a basic species-specific query, the type of questions that we want the community to be able to ask include: 'What submissions use the Oregon-R strain?', 'Which transcription factor antibodies were produced in a rabbit host?', 'Find only those experiments where worms were grown at 23°C', 'Find the genomic regions expressed only during pupal stages', etc.
Analysis of the submissions entered using the online submission tool shows that most community annotations were well supported and the ontology terms chosen were at an appropriate level of specificity.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com