The LymPHOS web application consists of a relational database and a web interface that allows data submission, querying and visualization.
The majority of clarification points related to economic data analysis and covered issues such as inconsistencies between the clinical and economic sections of the submission, queries regarding sources of data and their use in the economic analysis, questions about modelling decisions, data queries and requests for additional analysis.
The dossier should include the most current contact information and detailed guidelines for submissions, queries, or completed projects.
We also encourage feedback from the scientific community on the utility of the data submission and query interface and the general approach we have taken to curation.
To facilitate the submission of queries, cBioPortal implements the Onco Query Language (OQL) for selecting and defining genetic alterations for any subset of data.
Upon submission, the queries are processed by the ClassyFire classification tool, then entities or sequences are classified, and the results are then further processed, formatted and shown on a HTML output page (Figs. 6, 7).
However, we use a web server 2Struct (Klose et al., 2010), which allows manual submission of queries with a single point of access to a variety of secondary structure assignment methods beyond DSSP and STRIDE such as KAKSI (Martin et al., 2005), PALSSE (Majumdar et al., 2005), STICK (Taylor, 2001), XTLSSTR (King and Johnson, 1999) and P-SEA (Labesse et al., 1997).
Query submission will respond a sorted list of genes (identifiers) that satisfy query criteria.
On submission of a query, WENDI generally returns results within a minute.
This prediction system provides the users with simple and reliable models within hours of query submission, so that it is quite simply used for high throughput enzyme screening.
