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Retrotransposons were classified by class, subclass, order and superfamily.
Transposable elements can be hierarchically classified by class, subclass, order, superfamily, family and subfamily.
Lower levels of classification include subclass, order, and superfamily (Wicker et al. 2007).
Repetitive elements were classified by class, subclass, order, superfamily, family, and element type for each cluster.
Transposable elements can be classified in a hierarchical manner into: class, subclass, order, superfamily, family, and subfamily.
These classes are further subdivided into subclass, order, superfamily, family, and subfamily, according to their sequence similarities and structural relationships (Wicker et al. 2007).
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Subclasses and orders given are: Subclass:Prionodesmacea Order Paleoconcha Taxodonta: Many teeth (e.g. order Nuculida) Schizodonta: Big bifurcating teeth (e.g. Trigonia spp).
A unified TE classification with further subdivisions into subclasses, orders and families has been proposed [ 1].
TEs are divided into two classes depending on their transposition mechanism, each class is further divided into subclasses, orders and superfamilies [ 7].
A considerable effort was made over the last years to propose a new TE hierarchical classification system (Wicker et al. 2007) that subdivided them into subclasses, orders, superfamilies, and families.
We investigated the CAs present in the genome and transcriptome of the emerging model system Sycon ciliatum (Class Calcarea, Subclass Calcaronea, Order Leucosolenida, Family Sycettidae) and a second species, Leucosolenia complicata (Class Calcarea, Subclass Calcaronea, Order Leucosolenida, Family Leucosoleniidae) [ 27- 29].
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