Corresponding sub-facets and values are identified as well.
Three facets of query reformulation (content, format, and resource) as well as nine sub-facets were derived from the data.
It has been shown that the scale discriminates between the two related sub-facets of "emotional" and "cognitive" empathy [27].
We mapped every FANTOM5 project facet and sub-facet to one or more MeSH terms.
For each sub-facet, samples not contained within the largest cluster were removed.
Using these ontologies, each facet and sub-facet was mapped to a CL term.
Mappings from each of the FANTOM5 project primary cell-type samples to its facet, sub-facet and cell-type group.
The FANTOM Consortium provides an ontology (FF) to which they map each facet and sub-facet [ 8].
If no cluster contained more than one sample, all samples mapped to the sub-facet were removed.
If the mean JSD was greater than 0.25, we combined samples by their sub-facet, producing multiple expression profiles under the names of the sub-facets.
The Jensen Shannon distance (JSD) between each sample in each sub-facet was then computed [ 28], as described by Andersson et al. [ 9].
