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(a) The study workflow, presented as a flow chart.
Fig. 6 Jupyter notebook running the case study workflow.
Open image in new window Fig. 17 Interdisciplinary study workflow.
BLAST is the most computationally intensive task of our use case study workflow presented in.
See Fig. 6 for a screenshot of the Jupyter notebook where the case study workflow is being executed.
This screenshot shows the case study workflow running in a Jupyter notebook inside the virtual machine provided with the case study.
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P-GRADE portal is an open-source multi-grid portal that supports creation, execution and management of traditional and parameter study workflows on gLite and GT-2 infrastructures.
In this study, workflows, methods and software have been developed to allow efficient high-volume compound screening of 25 proteins by SPECT/CT of a tumour xenograft mouse model.
The need to assemble and integrate data across studies during ancillary study workflows can pose a key impediment to using a CTMS alone for ancillary study management.
The intended meaning of "cross-study data pooling" can vary widely in scope and degree of integration at different stages of ancillary study workflows and in different organizations.
Widely used standards have the potential to facilitate the reuse of study data, the automation of ancillary study workflows, and even the reuse of software systems themselves.
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