Sentence examples for structure the alignment from inspiring English sources

The HATS alignment method presented here makes use of a guide tree to structure the alignment process.

(A′ ) The laminar structure, the alignment and marker expression of Bergmann glia, Purkinje cells and granule cells in adult cerebellum are illustrated.

Because domain II is straight in the EGFR template and bent in the Her3 crystal structure, the alignment was carried out in three separate steps.

For instance, if an indel has occurred in a local repeat structure, the alignment algorithm has multiple possibilities to place the gap without changing the overall score of the alignment (see Figure 2a).

Thus, for several of the families, which include no proteins with solved structures, the alignment outside of the conserved motifs should be viewed with caution.

To predict secondary structures, the alignment of all FAs was submitted to JPRED; 4.1R sequence was also submitted to PSI-Pred and Disopred.

In this study, we took lowest energy conformation of the most rigid and highly active molecule (No. 82) as the template structure for the alignment.

3) Folding energy of the consensus secondary structure of the alignment computed by RNAalifold (consmfe ).

GeneWise was used to predict the gene structure when the alignment length was more than 50% of the query sequence.

All putative tRNAs were manually checked, considering the reliability of secondary structure and the alignment with known ascidian tRNAs.

We then selected structures that were similar to at least two other structures with the alignment score > 17.