Sentence examples for structure restraints from inspiring English sources
All parts together with the generated template-based model and secondary structure restraints were structurally concatenated by MODELLER.
Refinement was performed in Phenix [23] using the secondary structure restraints derived from the previously solved complex.
Secondary structure restraints for the Sec61 channel were generated in ProSMART (Nicholls et al., 2012).
Secondary structure restraints and non-crystallographic symmetry restraints were applied for the refinements.
Throughout refinement, reference and secondary structure restraints were applied to the ribosomal proteins using the Sc80S structure as a reference model (Nicholls et al., 2012).
A major point to note is that in each of these examples R osetta is used to complement structure restraints obtained early in the structure determination process.
Remarkable improvement in the model quality was achieved by refinement with autoBUSTER through implementation of local structure similarity restraints (LSSR) [38] and manual building using Coot [40].
To enable MD simulation of a transition state-like structure, distance restraints have to be used to prevent the structure from collapsing to the substrate or product structures which are lower in energy (Gao et al. 2006; Pan et al. 2005; Zheng et al. 2008; Xue et al. 2011).
There must be structure and restraint.
Two hundred approaches were performed, thereby yielding 155 structures with restraint energies below a given threshold.
Seat safety relies on a three-legged-stool so to speak: the seat structure, the passenger restraints and attachment to the aircraft.
